lowyhong: From experience, I'd pick Navy in the beginning and focus on Hacking and Standard Weapons, as well as low-level Maintain. Shotgun and Pistol should be your main weapons until Hydroponics/Recreation. Later in the game, when you're good enough to use the Assault Rifle, invest in Energy Weapons, and use Laser Rapier as your staple melee weapon. Modify and Research are nice to have, but these should be low on your priority. For Upgrades, go with whatever you think better helps you survive (though I recommend having Lethal Weapon as one of them in the early game part).
For Stats, just increase as and when you think you need it. I would prioritise, in descending order of importance, Endurance, Agility, Strength, Cyber-affinity.
Sounds like a solid plan. :D