addams013: It looks like we have an update now. Do you know the best way to install updates without nuking saves? I have completed levels and challenges that I don't want to have go away.
I'm on Linux. The save games and progress information is stored in $HOME/.config/unity3d/NoClip/Zombie Night Terror, i.e. outside the game folder. I would assume that it's the same on other operation systems as well. If you want to be on the safe side you could search for the NoClip folder. On Windows >= 8 it should be in your user (usually c:\users\username) folder. You might even make a copy of that folder if you want to be extra safe.
It this case it would be the best to uninstall the old version and afterwards install the new version.