creativeballance: If I remember correctly, the Blackmane missions are on the "loosing path". I don't think you can win the game if you are on them.
MarkBenton: You can actually get back on the winning path if you pass these missions. However, I have recently come across this bug as well in Blackmane 2. The transports just won't jump. We need a fix for this.
I ran into this exact same problem too, you would figure with this many complaints they would release a patch... somehow i managed to get all but one transport to jump in the second mission and it said my mission objectives were completed but wouldnt give me the autopilot clearance. after dickin around for 15 minutes i got bored and blew the transport up and then i got my autopilot?!?!?!!!? that was weird? then i landed on the victory and moved to blackmane mission 3 where yup u guessed it, more impossible transport missions.i have an old 32bit xp laptop that im gonna try the game save edit on, im also gonna try locking on to all the transports before and after battle and ask them about status... it seems pointless but what can i do?