Hmm. Not sure what you mean by "very many". Are you going to all the !s you can find? Sometimes one quest will morph into another quest. Checking out dead bodies, that often have lootable letters or notes and keys on them, indicating another area, often opening scavenger hunts, which are named quests. Sometimes the bodies are "guarded treasure". Very often when you answer witcher quests or secondary quests or ?s, the map will open up new ?s. Some locations are involved in more than one quest (sometimes witcher gear diagrams).
I've played through once and didn't find ALL and every quest. But I got most of them, and at times, I actually got weary of so many quests and so little time. Doing a second playthrough now, getting to the point where "suggested level" has greyed out on a few (meaning, that you gain a lot less XP for completing the quest, rather than doing the quest at or about the suggested level to get full XP).
I don't think I've run into missing quests, just quests maybe I don't know about (?). Sometimes you have to have done something else (another quest or dialogue?) before the missing quest to trigger it?