I was looking for this so, I figured I'd post what I found.. I hope this helps someone.

Prologue: Main Quest

By The King's Will
A Test of Fire
Blood of His Blood
The La Valettes' Dungeons

Prologue: Side Quests

Melitele's Heart
Runaways
The Wild Hunt
The Assassin's Kings

Act 1: Main Quest

Hard Landing
By The Will of God and The Executioner
The Immoral Proposition
Kayran
The Kayran: The Matter of Price
The Kayran: Ostmurk
Kingslayer
Race Against Time
Choice: Vernon Roche
Choice: The Scoia'tael
Assassination
Barge

Act 1: Side Quests

In The Claws of Madness
Party
Nests: The Nekker Contract
Nests: The Endriag Contract
Poker Face: Flotsam
Arm Wrestling: Flotsam
Mano a Mano and Fight Club
The Troll Contract
The Smell of Incense
Malena
Melitele's Heart
Mystic River
Fight Club
Little Shop of Dreams

Act 2: Iorveth's Path

The Kings Meet
The Council
Xenanthemum
Dragon's Dream
Searching for Triss - Part 1
Royal Blood
Searching for Triss - Part 2
Healing Saskia
Draug
Battle for Vergen

Act 2: Iorveth's Path - Side Quests

The Succubus
Baltimore's Dream
Poker Face: Vergen
Fistfight
Professional Arm Wresling: Vergn
Harpy Queen Contract
Infested Mine

Act 2: Roche's Path

Negotiations
Conspiracy Theory - Part 1
The Curse
Mission
Letho
Draug
Conspiracy Theory - Part 2
The Battle for Vergen

Act 2: Roche's Path - Side Quests

Little Sisters
Ave Henselt!
The Rotfiend Contract
Poker Face: Henselt's Camp
Arm Wresling: Aedirn
Against The Blue Stripes
Lost Lambs
Mystic River (Part 2)
A Score to Settle

Act 3: Iorveth's Path

In The Name of a Higher Cause!
The Dagger
Triss
The Debate
Dragon
Epilogue

Act 3: Roche's Path

Start pro Roche
Bastards
Triss
The Debate
Dragon
Epilogue

Act 3: Side Quests

The Gargoyle Contract
An Encrypted Manuscript
Professional Arm Wrestling: Loc Muinne
A Score to Settle
Poker Face: Loc Muinne

Moar:

Prologue: Side Quests
There is another quest in prologue where the quest name is "Woe to the Departed" or something at the part "We were separated at the temple".

Act 1: Side Quests
Fight Club
Little Shop of Dreams

Act 2: Roche's Path - Side Quests
Lost Lambs
Mystic River (Part 2)
Little Sisters (not Three Sisters)
A Score to Settle

Updated OP. Thanks for the additions