Although I am admittedly a huge cdpr fanboy, every bug you listed is 100% correct. I would have thought they would have at least fixed the bomb thing with the ee. It would add a lot to the game if you could strategically throw bombs at distant targets, and actually control which npc it would hit. Another one is the huge delay between hitting the throw button and Geralt actually throwing the knife or bomb.
The other complaints you listed were totally fair as well. Good job to you for actually making a realistic write up of problems that need to be fixed, not like some of the QQing going on, like, "it's too hard!" or "movement is complete shit" that we hear all the time.
Where I will differ with you is the degree to which I think these problems bring down the game. To me, while some are extremely frustrating, I think it is a testament to the overall quality of the game that it is still far and away widely recognized as one of the best modern PC action RPGs ever made. It is still my favorite game at the moment.
Still, when it comes down to it, some of these things are just so obviously defective that there really isn't an excuse for not fixing them. While I'm sure the ee will be great, I can't help but feel that this was a huge blown opportunity to finally fix some of the more well known problems with the game. There is no reason that the bomb system should be as sketchy as it is. Also, having to walk back and forth over a bag of loot 8 times in order to pick it up is lame. There are minor annoyances, but taken together they reduce immersion, and fixing them could help to make a great game even better.