Does anybody know where Pandora Directive stores your save files? I've looked everywhere I can think of, in the players and games folders and both are empty, but I know the saves are there because I can start from my last saved game. I need to know where the saves are because I'm trying to transfer the game to another computer of mine. Thanks!

Heres a couple different locations you can try.
C:\users\your_username\AppData\Local\ ;Virtual Store\Program Files\gog.com\
The above folder may be hidden. Also if your running 64 bit it will be Program Files(x86)
or C:\users\your username\saved games or \mydocuments?

ok i figured this out for mac. It was annoying.

The saved games are stored in a single boxer file in ~/user/Library/Application Support/Boxer/Game States/*

You need to copy that to your current user on the new computer. Then the game has to be run through GOG's launcher and it should just work.

For me, i copied that game file over, installed PD from Gog galaxy and when it launched everything worked.

The REAL save games are stored in the /PANDORA/GAMES directory, which you can find if you look in the game resources on mac. That directory is empty and supplemented by boxer i'm assuming during gameplay.