I have an X52 with rudder pedals. When I play RB3D the joystick and the rudder pedals seem to be switched so I am controlling roll and pitch with my feet and rudder with my joystick. In the read me it says to look for the rb2sim.ini file to switch this but that file seems to be absent. Anyone know how I can fix this problem. BTW, when I disconnect my pedals nothing works.

rb2sim.ini file should be in the main game folder. For some reason it is not in the GOG version. Strange.
This is what my install from an honest to goodness RB3D disk says:
[baron]
groundgunnernoise=800
groundgunnerbase=25
groundgunnerconvergence=1020
tailgunnernoise=250
tailgunnerbase=10
tailgunnerconvergence=1350
prefspanicchance=150
prefspanictime=150
bulletmassfactor=11
takeoffinterval=0.3
prefsExpHard=3000
prefsExpEasy=2000
prefsGHard=3000
prefsGEasy=2000
[controls]
rudderisthirdaxis=0
Just open up a text file, paste it in and save as rbsim2.ini