If you've installed the PST Fixpack from the mod guide sticky, then you can just leave the area for a few days, and they'll start talking to you again. Since you (probably) haven't done anything SUPER bad to them, like killing one of them or destroying their projects, that should be enough.

If you're just playing the base game, however, there's a very good chance you're screwed. Try waiting 2-3 days first, but if that doesn't work, you'll need to reload an earlier save. The original script for the "Foundry alarm system" is pretty borked, and the Fixpack includes changes from the original scriptwriter to fix it. Without that fix, it's possible that their anger will be permanent.