I haven't tried the Offline Installer files yet (I have downloaded them, just not used them yet)
I used GOG Galaxy to grab the update and the game seems to be running fine here.
I have launched the game with GOG Galaxy running and the game was fine, and a second time without GOG Galaxy running by launching the games exe directly (same as if using the Offline Installation) .. and the game ran fine again.
Sorry I cant be any help, but I am just chipping in to say the download may not be at fault here.
I had the usual post update cache graphics refreshing related occasional stutters in the first few minutes, but the game after the update has settled in has been as smooth as ever for the last hours play, and subsequent reloads after the first were all fine too.