Well, I found the source of the problem with sound lag in patched 1.6 version.
If you set PlayMP3=1 in mm6.ini (default is=0) sounds lag. If you edit and set PlayMP3=0 there's no sound lag, but also no music. But you can hear the music if you have the original CD2 of MM6 in the CD-ROM drive (or an image of the CD mounted in daemon tools or similar program).
Also you can burn the mp3 files to a CD using mixed CD-audio mode, leaving a track #1 for data, and then the music tracks. Keep original CD label just in case. EDIT: Well, anyway you can burn a normal CD-Audio, just put any other music file in the first track.
This hotfix works both on GOG's and with original MM6 two CDs version.
EDIT: Anyway, I don't think the op initial problem is solved as previously stated, because the actual solution ideally would fix the sound problem WITHOUT removing patch 1.6
Post edited September 11, 2009 by Lobuno