This scene from the South Park movie has a very special place in my heart.
But there's zillions of great moments, in my opinion more good ones than bad ones, although admittedly the last two seasons were rather disappointing IMO (but the show is still in a better state than the Simpsons currently are). Oh yeah, also I love the "they took our joooobs" running gag. Makes me lol every single time.
koima57: The contest of the biggest turd, with Bono from U2 by the end.. ^^
Haha, I actually thought of mentioning that one. I particularly loved that they displayed "Emmy award winning show" (or something like that) during the most moronic and disgusting moments of that episode.
Edit: Oh yeah, I think I found one the biggest lows: The "Make Love, Not Warcraft" episode. I mean, it was very original and funny but I think it was still simply wrong in many ways starting with the fact that the episode felt more like an ad for WoW than like legitimate satire. The amount of respect for WoW and Blizzard they showed in that episode did not at all fit the overall style of the show.