Esperantisto: Will the games be updated to use the latest version of DOS Box? Or perhaps the new version has no significant improvements?
timppu: I presume GOG will not update them unless there is a real reason to do so. Don't try to fix something that works.
However, users can replace DOSbox with their installed games, if they so wish. I recall I once tried a newer DOSBox in e.g. Shattered Steel, to see if it helps with the gameplay problems the game has (had?).
Considering how frustrating it was to play Shattered Steel when it was originally released, I honestly can't see a newer DOSBox magically changing the hitboxes and awful hit detection of the game. :)
Edit: Well, apparently, upgrading DOSBox actually does seem to address some of the hit detection issues. Imagine that.