Raze_Larian: [...] Maybe there is a difference between how the Larian Vault release stores the version information and GOG, that is causing the error?
The host always got the mismatching versions warning and we could play a longer match just fine with GOG on GOG. First time we tried I was kicked from the lobby after the version warning with steam as client and GOG as host, but we had another player in the lobby at that time with GOG patched with VaultPatch to 1.0.33.0 just like the host.
With my previous post it was the same host, this time only the host I was connected to with the steam-version as client. We did not start a game, though.
tl dr: It sounds unlikely to me and it is a question I recommend asking the developers.
OT: Were you able to get an answer to my question if it is possible to change nicknames and avatars in the gog-version's multiplayer (I Asked in a different thread)? The "invite friend"-button that works in the steam-version is without function in the gog-version, by the way. Just nothing happens when clicking it.