gibbeynator: File system reads out as NTFS. Tried installing it into a different base folder, nothing. And I tried installing it to the same folder as the 1.0 installer, also nothing.
Have you tried to keep it simple and installed it just to a subfolder of C:\
If you haven't, there are other possibilities that could cause problems, like symbolic links.
Further, Windows allows to limit the space to use on one disk. Check if there's a so called disk quota set.
Here are some related tech infos:
http://technet.microsoft.com/en-us/magazine/dn456536.aspx (scroll down to "Configure disk quotas")
Is there anything unusual in your configuration harddisk wise?
Which Windows version do you use?