*spoilers follow* So I'm still in Seattle and I've killed Sak and her goons, and have the Harrier pilot available. I see that I can either go to the Order church or go to the WTO Terminal, but I wanted to do the Omar storyline on my first playthrough but I can't find any missions to do for them, other then scanning the alien corpse, which I've already done. Should I just choose one of the other factions' destinations and then at some point there will be a chance to side with the Omar?

Thanks for the info. Looks like I'm going to church--apparently the WTO don't like hackers and/or people who disable their bots. I can't go to the WTO terminal without a turret opening up on me, and I don't feel like using a grenade to disable it. Seriously, I just wanted a free queequegeno out of that one ATM. How was I supposed to know there was a camera there?. . .there never were any by ATMs in the first Deus Ex.

I could've sworn there's a camera by ATMs in Paris in the dead-end metro station where there's that one guy selling you some items and asking you to take out the MJ12 bot & guys nearby.

You're right! I'd forgotten about that one.