MaximeMartyr: And what about those who don't want to resort to a client app? :-p
QWEEDDYZ: Why not? For this is good solution. Game remain drm-free in GOG Galaxy (except very few titles).
For Quake 2 game+addon+mods started by default GOG link from optional GOG Q2 Launcher. It possible to add there more mods or replace main executable. Im never check Quake 1 (never be a real fan), as i can see there is new launcher exe file, but there is no config for it. If you want easy solution - it be GOG Galaxy (require Win8.1 but barely work o Win7). Or some 3rd party.
If no client apps at all - manually created links. Just like in good old days. Go ahead, you are free to choose. :p
I think GOG Galaxy is not ready yet. I tried it a few times and every time, it caused troubles with my games.
I don't mind an app who makes my life better, but if it actually makes my life harder, no thanks, polish it before I use it!
That's why I stick with the good old way for now, I just download my games from GOG then I manage them myself.
Moreover, why would I choose to stick with the outdated restrictive original game engine when there are some upgraded alternative engines who expand the possibilities freely available?
Playing Quake with Quakespasm and Quake 2 with KMQuake 2 doesn't break the original spirit, it merely remove the technical limitations from an outdated technology to allow the games to achieve more than they could do at the time of their creation.
Anyway, an upgraded engine is required to play the fan-made mission packs who are too much for the original outdated engine, just leave it to rest in peace, it did its job, now it is no more needed, it can rest and leave it to its successors. ;-)