gibbeynator: This is the best one I could get, print screen just gives me a black image with the weird streaks.
Hmm, can't really tell from that, as you say, the print screen doesn't capture it correctly. You could try using fraps or similar to capture a screenshot. Or at worst a photo then uploaded.
In any case, if those purple dots are what you mean and they are that colour then that isn't right. GOG's screenshots include some from the start of the first level if you want to compare it. They are the newsflash, the avoid the radar and the second screenshot with the red floor. Others are from the first level too.
Have you tried using the 3DFX option instead of software mode?