BlueKronos: Edit: with the fact that they do list it for other systems, you could ask their support dept for the motherboard information on that system and see if they'd give it to you.
Leroux: I wrote to the seller linked to in the OP, even though the PC doesn't seem available from them anymore, and I also wrote to two other sellers still offering it. So far, one of them replied with the expected answer, that they don't have any information about the motherboard.
But from what you wrote, the motherboard doesn't seem all that bad. And the "interrupts" process eating CPU power apparantly points to driver issues; maybe it was connected to some external devices the commenter was using and wouldn't concern me, or it could be fixed by updating drivers? At least I hope so. So far, IIRC, nobody that I've talked to has said anything bad about the PC's components, other than that I might get this kind of PC cheaper when building it myself.
Yes interrupts can be driver issues, hard drive fragmentation or something like a virus scan running in the background (though that can be seen if looking at the processes that it's not just 'mystery' cpu utilization, but, if not looking at processes there is no 'running' program that would be the cause since virus scans run in the background intentionally. So most likely as Fenixp said it isn't hardware related.
As to the question of AMD processor, they are cheaper generally than the Intel cpus because they don't sell as well and AMD tries to keep their price down to make them reasonable. At one point AMD definitely had the edge on performance, buying the same speed of processor between AMD and Intel and you'd get more out of your AMD. From what I've read that's not really the case today, unless you're overclocking your CPUs since AMDs are known for being better at that. As the cores there is some debate over that as AMD 6-core cpus are higher physical cores than the Intel 4 cores, but if the Intel 4 core is using hyper-threading then it can have 8 virtual cores. So it's not easy to make a direct comparison.
The CPUBenchmark site darkplanetar posted is a good one though. The rating of the AMD FX6300 there as compared to the Intel i5-4430n from the OP gives a slight edge to the AMD cpu between those two performance wise, but they are really about equal. The AMD cpu being cheaper though might make it the better of those if you don't have a preference for an Intel.
The other thing to keep in mind when changing from an Intel to an AMD cpu is that the motherboard is going to be different. You can't just swap one to the other these days; but, if you're getting someone else to build it or a pre-built system you shouldn't need to worry about it, since they wouldn't be trying to sell you an Intel based motherboard with an AMD cpu.
For those two links you posted from Amazon the first one is very close to the OP Hyrican system but has the benefit of a larger hard drive and specifies that it has a 600 Watt power supply which is good for a gaming system. Also has a lot of positive reviews which is good to see. (Though the second one only has 450W which is a little low in my opinion since it doesn't allow for much in terms of adding extra drives or expansion cards should you want to in the future). The difference in graphic cards between those two system also gives the advantage to the GTX 660 in my opinion as it has 2GB of GDDR5 instead of 1GB and according to
the GTX 660 is a better performance wise and value (performance vs. cost) wise between those two. So if the 30 euro difference doesn't break the bank I'd go with the [url=http://www.amazon.de/ANKERMANN-PC-FX-ULTRA-M5A78L-M-24xDVD-Writer-Netzteil/dp/B007I7H1IM]first system which does compare favorably with the Hyrican system in the OP.
One thing it also gives is the motherboard, and the Asus M5A78L-M motherboard does have a few good reviews, the only thing I didn't like about it was that on one review site it said it only allows for a maximum of 8GB of Ram which doesn't allow for you to expand your ram down the road but looks like it is a good value board. According to ASUS specs though the board allows up to 32GB ram and has 4 slots which should be fine.
Also it doesn't come pre-installed with an optical drive (CD/DVD/Blu-ray or burner) though in the details on the listing they have several options that look like you can have included. Though those are pretty easy to install yourself should you want to do one later, if even needed since many things like GOG games are downloadable rather than having to install with physical media.