macAilpin: For all the good armor he was too easy to kill. Strange mod.
To my understanding, these assassins scale with your level, and at higher levels, they can actually be quite dangerous.
I believe that you can stop further attacks by telling a guard about the incident.
Greywolf1: There are mods preventing them from appearing, simply search the internet for "Tribunal delayed" or so.
I myself use one of these mods and play the whole game without the assassins.
Alternatively, you could just play without Tribunal enabled, and only enable it when you are ready to play the expansion.
(One thing to note, however, is that if you don't enable Tribunal, or if you disable the assassins (preventing Tribunal from starting), you won't be able to get the Fortify Skill effect; the only other source is in the island added by Bloodmoon. Then again, some might consider that effect (or at least certain uses of it) to be too powerful.)