Tomb Raider didnt get uldates since 2019. As all DosBox or ScummVM releases it use custom build of DosBox/ScummVM. For DosBox its usually DosBox-CS by GOG (mean -CloudSaves with just difference where temporar changing ingame folder files stored are - redirected to in game new folder cloud_saves instead of ...user/AppData/DosBox/). For TR since 2018 or 2019 (or even early?) it use 3rd party custom DosBox (again with changed CS above it) with nGlide emulator additional support (as in remember).
So yes it did use custom DosBox. There was no recent, at least not since 2019, updates. And as i remember it didnt state it is SVN (mean testing) build. Are you sure it wasnt you or some OS/3rd party client service did overwrite existed build?
To play on Linux for a DosBox/ScummVM releases here that didnt get native OS Mac/Lin builds you need just install native emulator above GOG's one. Same for Win (probably better than GOG). Do not use Steam Proton here. I mean no need to.
For reference/further info at GOG support site there is PCGW article link. Look to additional info on each game articles on PCGW (with wine/protondb and else links there), DosBox article (seems much informatics for me no need go to DosBox wiki linked there), GOG article and Linux article.
Go to each game GOGDB org website pages to see when last update did fome and which build GOG use (there is GOG Galaxy filelists where DosBox-CS2 and nGlide files listed).
http://www.gogdb.org/products?search=tomb+raider (there is also PCGW articles linked on game pages on GOGDB same way as PCGW link to GOGDB on each page).