nightcraw1er.488: That is one reason why I don't use automated ones. I have various folders with each game folder, for instance:
Docs, saves, mods, patches, engines, source etc.
I also have comics/books removed from that area to my books area.
The structure then becomes more complex when multiple versions of a game are needed to be kept. This also has to be linked to a DB.
So it's not just a simple download latest of everything to a folder.
timppu: How many games do you have on GOG? With 1384 games. I just don't have time nor capacity to do that kind of micromanagement. Also, tracking (and downloading manually) updates to games is just too hard with this many games. I tried that for awhile back when I had something like 500-600 GOG games, and already back then it was an overwhelming task, quite soon I lost track which games were not up to date.
To me it is enough that my GOG game installers and extras are in somewhat understandable folder structure so that I can find the title I am looking for pretty easily from my hard drive. It is not like a buttefly or a stamp collection where everything has to be in perfect order, it is simply an offline storaga place for my GOG game installers and related files.
EDIT: About save games, if I feel I want to keep them after finishing and uninstalling a game, I have a completely separate folder structure for those (also non-GOG games). I don't keep them with my GOG installers. Same for any mods, non-GOG updates and such.
Nowadays quite often I don't keep old saves anymore though. I feel that if I want to get back to a game later (after finishing it), I will replay it from the very start anyway.
On GOG, yes around the same as you. Overall, in the 10k range, not all digital, not all games (could just be patches and things). Hence why getting it right with consistent structure is so important. I can write code to proces this fixed structure, check integrity and such like. A year or so back I migrated into a new structure, ran various checks and moved from excel to a database, this took 3 months even with automation, and this didn't include spectrum roms. Gogrepo might work if gog was your only store, but I think most people use several, even without steam there is 20-30 stores or dev sites I use, gogrepo doesn't work there.
Not getting into book, music and other files management, it's amazing what digital junk you build up over your lifetime, and I am a hoarder, even programs from back in the early spectrum days!